PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010753-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 546aa    MW: 59132.2 Da    PI: 8.8587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010753-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0586108123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  NNU_010753-RA  86 FVCEICSKGFQRDQNLQLHRRGH 108
                    89*******************88 PP

2zf-C2H212.60.00041162184123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H +t+
  NNU_010753-RA 162 WKCDKCSKRYAVQSDWKAHSKTC 184
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-785108No hitNo description
Gene3DG3DSA:3.30.160.606.6E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.88786108IPR007087Zinc finger, C2H2
SMARTSM003550.03686108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355190127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.44E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MMKGFIIQQH PAADQENMSN LTSASGEASV SSGNKAETGA MYPQQSFASP NQTPVVKKKR  60
NLPGNPDPDA EVIALSPKAL LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRTSK  120
EVKKRVYVCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITTNPLLAPQ PGSSTSHINL  240
QPQLINNHDL QALSLKREQQ QQQQQLFNLR SDTPPWLACS SVVGAGPGPP PIDFSSSLFS  300
TRIDQEFSRT QPSIHHENLN PNPTPSLPPY NPSASPHMSA TALLQKAAQM GATMSKPSSS  360
TMLRPHQTHM PATTGNTATS VPTTTTGYGL CLSSREEMES GFVHGLATFR SKAGVVSGLI  420
DHVSATAGAG GPSLLQDMMT SLSSATGFDG PPFDEDPFGM LSSKRDGNPN ESLSKTTSTT  480
HHLSRNEGGG SGGGGGAGGN DGLTRDFLGL RAFSHRDILN MAGLDHCMSS SSPYDQSQQN  540
QKPWQG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-119AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262085.10.0PREDICTED: zinc finger protein NUTCRACKER isoform X1
SwissprotQ9LRW71e-130IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLF6H3N10.0F6H3N1_VITVI; Putative uncharacterized protein
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-117indeterminate(ID)-domain 7